Complete list of translated genotype names (spoligotype:VNTR type).

Openness rating:
Reason: Content of file appeared to be format "CSV" which receives openness score: 3.
★★★★★  Linked data - data URIs and linked to other data (e.g. RDF)
★★★★☆  Linkable data - served at URIs (e.g. RDF)
★★★☆☆  Structured data in open format (e.g. CSV)
★★☆☆☆  Structured data but proprietry format (e.g. Excel)
★☆☆☆☆  Unstructured data (e.g. PDF)
Score updated: 27/06/2016

Responsible Party: Animal and Plant Health Agency (pointOfContact)

(Uncategorised)

This dataset provides a list of translated genotype names (spoligotype:VNTR type) for bovine tuberculosis genotypes. Each isolate of bovine tuberculosis (bTB), usually one per herd breakdown, is spoligotyped and then VNTR typed at 6 loci. Together the spoligotype and VNTR type of an isolate are refered to as its genotype. Each unique spoligotype pattern is given a number, such as APHA Type 17 but the VNTR type is a complex set of 6 numbers such as 7-5-5-5-3-3.1. To simplify the reporting of bTB genotypes the combination of spoligotype and VNTR type is 'translated' into a simpler format: spoligotype number followed by a colon followed by a letter. Thus, an isolate of APHA Type 17 and a VNTR type 7-5-5-5-3-3.1 is known as genotype 17:a. This file lists the translation between simplified genotype and the original spoligotype/VNTR data. Attribution statement:

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Dataset Extent

Latitude: 60.8600° to 49.86°
Longitude: -8.45° to 1.78°

Data Resources (1)

Resource locator

Additional Links (2)

XML
Source GEMINI2 record
HTML
Source GEMINI2 record (formatted)

Additional Information

Added to data.gov.uk 27/06/2016
Temporal coverage 28/5/2003 - 18/2/2016
Harvest URL http://environment.data.gov.uk/discover/apha
Harvest date 04/08/2016 08:51
Metadata date 4/8/2016
Harvest GUID 9e807b84-2da9-4c5b-857c-d48f55b5977e
Extent Latitude: 60.86000000000001° to 49.86°
Longitude: -8.45° to 1.78°
Spatial reference system http://www.opengis.net/def/crs/EPSG/0/27700
Dataset reference date 14/6/2016 (publication), 14/6/2016 (publication)
Frequency of update notPlanned
Responsible party Animal and Plant Health Agency (pointOfContact)
Access constraints There are no public access constraints to this data. Use of this data is subject to the licence identified.
ISO19139 resource type dataset
Metadata language English
Theme No value
Schema/Vocabulary No value
Code list No value
Service Level No value
Coupled Services (none)