Identification

Title

Farm management and longitudinal data on antibiotic use and antibiotic resistant E. coli for 53 dairy farms, South West England, 2017-2019

Abstract

This dataset contains over 4000 faecally-contaminated environmental samples collected over 2 years across 53 dairy farms in England. The samples were analysed for E. coli resistance to amoxicillin, streptomycin, cefalexin, tetracycline and ciprofloxacin and detection of resistant strains is presented in the dataset as a binary result, along with mechanisms of resistance to third generation cephalosporins where relevant. In addition there is comprehensive farm management data including antibiotic usage data. Full details about this dataset can be found at https://doi.org/10.5285/c9bc537a-d1c5-43a0-b146-42c25d4e8160

Resource type

dataset

Resource locator

https://data-package.ceh.ac.uk/data/c9bc537a-d1c5-43a0-b146-42c25d4e8160

name: Download the data

description: Download a copy of this data

function: download

https://data-package.ceh.ac.uk/sd/c9bc537a-d1c5-43a0-b146-42c25d4e8160.zip

name: Supporting information

description: Supporting information available to assist in re-use of this dataset

function: information

Unique resource identifier

code

https://catalogue.ceh.ac.uk/id/c9bc537a-d1c5-43a0-b146-42c25d4e8160

codeSpace

doi:

Dataset language

eng

Spatial reference system

code identifying the spatial reference system

Classification of spatial data and services

Topic category

farming

Keywords

Keyword set

keyword value

Agricultural and Aquaculture Facilities

originating controlled vocabulary

title

GEMET - INSPIRE themes, version 1.0

reference date

date type

publication

effective date

2008-06-01

Keyword set

keyword value

Cattle

Antimicrobial resistance

South West England

Geographic location

West bounding longitude

-6.452

East bounding longitude

-1

North bounding latitude

51.766

South bounding latitude

49.864

Temporal reference

Temporal extent

Begin position

2017-01-01

End position

2018-12-31

Dataset reference date

date type

publication

effective date

2021-09-16

Frequency of update

Quality and validity

Lineage

1. Records of samples taken from 53 farms including date, type and descriptive location of sample. 2. Records of microbiological analyses of the samples to identify E. coli resistant to amoxicillin, cephalexin, tetracycline, ciprofloxacin and/or streptomycin). 3. For samples where E. coli resistant to cephalexin were detected, results of laboratory testing for resistance mechanism. 4. Questionnaires administered to farmers between Jan 2017 and Jan 2019. These collected demographic and farm management data at the start and end of the data collection periods for each farm, as well as questionnaires around choices of antibiotic administered during the data collection period at the convenience of the participants. 5. Prescription medication records acquired from veterinary practices and farm records. All calculations and data entry were checked for errors before data was accepted.

Conformity

Conformity report

specification

title

Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services

owner

Metadata on metadata

Metadata point of contact

organisation name

Environmental Information Data Centre

full postal address

Lancaster Environment Centre, Library Avenue, Bailrigg

Lancaster

LA1 4AP

email address

info@eidc.ac.uk

responsible party role

pointOfContact

Metadata date

2021-09-17T14:53:43

Metadata language

eng