Farm management and longitudinal data on antibiotic use and antibiotic resistant E. coli for 53 dairy farms, South West England, 2017-2019
This dataset contains over 4000 faecally-contaminated environmental samples collected over 2 years across 53 dairy farms in England. The samples were analysed for E. coli resistance to amoxicillin, streptomycin, cefalexin, tetracycline and ciprofloxacin and detection of resistant strains is presented in the dataset as a binary result, along with mechanisms of resistance to third generation cephalosporins where relevant. In addition there is comprehensive farm management data including antibiotic usage data. Full details about this dataset can be found at https://doi.org/10.5285/c9bc537a-d1c5-43a0-b146-42c25d4e8160
dataset
https://data-package.ceh.ac.uk/data/c9bc537a-d1c5-43a0-b146-42c25d4e8160
name: Download the data
description: Download a copy of this data
function: download
https://data-package.ceh.ac.uk/sd/c9bc537a-d1c5-43a0-b146-42c25d4e8160.zip
name: Supporting information
description: Supporting information available to assist in re-use of this dataset
function: information
https://catalogue.ceh.ac.uk/id/c9bc537a-d1c5-43a0-b146-42c25d4e8160
doi:
eng
farming
Agricultural and Aquaculture Facilities
publication
2008-06-01
-6.452
-1
51.766
49.864
2017-01-01
2018-12-31
publication
2021-09-16
1. Records of samples taken from 53 farms including date, type and descriptive location of sample. 2. Records of microbiological analyses of the samples to identify E. coli resistant to amoxicillin, cephalexin, tetracycline, ciprofloxacin and/or streptomycin). 3. For samples where E. coli resistant to cephalexin were detected, results of laboratory testing for resistance mechanism. 4. Questionnaires administered to farmers between Jan 2017 and Jan 2019. These collected demographic and farm management data at the start and end of the data collection periods for each farm, as well as questionnaires around choices of antibiotic administered during the data collection period at the convenience of the participants. 5. Prescription medication records acquired from veterinary practices and farm records. All calculations and data entry were checked for errors before data was accepted.
publication
2010-12-08
Comma-separated values (CSV)
If you reuse this data, you should cite: Reyher, K., Avison, M., Schubert, H., Cogan, T., Gould, V. C. (2021). Farm management and longitudinal data on antibiotic use and antibiotic resistant E. coli for 53 dairy farms, South West England, 2017-2019. NERC EDS Environmental Information Data Centre https://doi.org/10.5285/c9bc537a-d1c5-43a0-b146-42c25d4e8160
University of Bristol
https://orcid.org/0000-0003-4912-5026
name: ORCID record
description: ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers.
function: information
author
University of Bristol
https://orcid.org/0000-0003-1454-8440
name: ORCID record
description: ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers.
function: information
author
University of Bristol
author
University of Bristol
author
University of Bristol
author
custodian
publisher
University of Bristol
pointOfContact
University of Bristol
owner
Lancaster Environment Centre, Library Avenue, Bailrigg
Lancaster
LA1 4AP
UK
name: EIDC website
description: The Environmental Information Data Centre (EIDC) is the UK's national data centre for terrestrial and freshwater sciences.
function: information
pointOfContact
2024-02-27T16:19:31