Identification

Title

Standardised counts of bacteria, fungi and micro eukaryotes abundances across geo-linked sampling locations on grassland, UK (2016)

Abstract

The data consist of standardised counts of taxon abundances (bacteria, fungi and micro eukaryotes) from soil samples collected from paired intensive and extensive grassland systems, including low and high pH parent soils, from 32 sites across the United Kingdom. The samples were collected during winter and spring 2015-2016 from sites across the UK. DNA were extracted and taxonomic marker genes assessed using high-throughput DNA sequencing techniques to yield information about the genetic diversity and abundance of the microorganisms therein. The data were collected to help understand soil functional change in a variety of management and climatic scenarios as part of NERC U-GRASS (Understanding and enhancing soil ecosystem services and resilience in UK grass and croplands) award (NERC Reference NE/M017125/1) part of the NERC Soil Security Programme. Full details about this dataset can be found at https://doi.org/10.5285/11bc98b8-5f2b-4a25-804c-16010052cdb7

Resource type

dataset

Resource locator

https://data-package.ceh.ac.uk/data/11bc98b8-5f2b-4a25-804c-16010052cdb7

name: Download the data

description: Download a copy of this data

function: download

https://data-package.ceh.ac.uk/sd/11bc98b8-5f2b-4a25-804c-16010052cdb7.zip

name: Supporting information

description: Supporting information available to assist in re-use of this dataset

function: information

Unique resource identifier

code

https://catalogue.ceh.ac.uk/id/11bc98b8-5f2b-4a25-804c-16010052cdb7

codeSpace

doi:

Dataset language

eng

Spatial reference system

code identifying the spatial reference system

Classification of spatial data and services

Topic category

biota

Keywords

Keyword set

keyword value

Soil

Environmental Monitoring Facilities

originating controlled vocabulary

title

GEMET - INSPIRE themes, version 1.0

reference date

date type

publication

effective date

2008-06-01

Keyword set

keyword value

internal transcribed spacer

Soil

16S

ITS

18S

paired

ribosomal

bacteria

fungi

micro eukaryotes

genetic diversity

DNA sequencing

Geographic location

West bounding longitude

-4.828

East bounding longitude

0.797

North bounding latitude

56.249

South bounding latitude

50.437

Temporal reference

Temporal extent

Begin position

2015-06-15

End position

2018-10-30

Dataset reference date

date type

publication

effective date

2019-09-11

date type

creation

effective date

2018-10-30

Frequency of update

notPlanned

Quality and validity

Lineage

Soil samples were collected from 32 grassland sites across the United Kingdom. Total soil DNA was extracted from field moist soil. Extracted DNA was subject to taxonomic amplicon sequencing and bioinformatics processing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. The compiled data set was exported as a comma separated value file for deposition into the EIDC.

Conformity

Conformity report

specification

title

Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services

reference date

date type

publication

effective date

2010-12-08

degree

explanation

Data format

name of format

Comma-separated values (CSV)

version of format

Constraints related to access and use

Constraint set

Limitations on public access

Constraint set

Limitations on public access

Constraint set

Limitations on public access

Constraint set

Limitations on public access

If you reuse this data, you should cite: Griffiths, R.I. , Puissant, J., Goodall, T.I. (2019). Standardised counts of bacteria, fungi and micro eukaryotes abundances across geo-linked sampling locations on grassland, UK (2016). NERC Environmental Information Data Centre https://doi.org/10.5285/11bc98b8-5f2b-4a25-804c-16010052cdb7

publisher

Metadata on metadata

Metadata point of contact

organisation name

Environmental Information Data Centre

full postal address

Lancaster Environment Centre, Library Avenue, Bailrigg

Lancaster

LA1 4AP

email address

info@eidc.ac.uk

responsible party role

pointOfContact

Metadata date

2021-06-25T18:42:43

Metadata language

eng