Identification

Title

List of UK black poplar clones and their DNA fingerprint (2007-2015)

Alternative title(s)

UK native black poplar (Populus nigra subsp. Betulifolia ) clonal identification using microsatellite markers and their National Register number

Abstract

Native black poplar in the UK is a rare and endangered tree species that has been heavily reproduced vegetatively, leading to issues of widespread clonal replication. This data presents the DNA fingerprints from a panel of 7 microsats that are used to characterise unique clones for entry in the FRM National Register of Basic Material. Further information is available at http://www.forestry.gov.uk/frm Attribution statement:

Resource type

dataset

Resource locator

https://s3-eu-west-1.amazonaws.com/data.defra.gov.uk/Forestry/FC_OpenData/FR/UK+Black+poplar+clones+and+DNA+fingerprints.xlsx

protocol: WWW:LINK-1.0-http--link

name:

description:

Unique resource identifier

code

57ebd6a8-08d0-46c6-9253-547c27854df6

codeSpace

Dataset language

eng

Spatial reference system

code identifying the spatial reference system

http://www.opengis.net/def/crs/EPSG/0/27700

Classification of spatial data and services

Topic category

environment

Keywords

Keyword set

keyword value

OpenData

Keyword set

keyword value

Research

Science

DNA fingerprint

Clonal identity

Keyword set

keyword value

DNA

originating controlled vocabulary

title

reference date

date type

publication

effective date

2010-01-13

Geographic location

West bounding longitude

-6.236

East bounding longitude

2.072

North bounding latitude

59.00000000000001

South bounding latitude

49.943

Extent

Extent group

authority code

code identifying the extent

http://data.ordnancesurvey.co.uk/doc/country/england

Temporal reference

Temporal extent

Begin position

2007-01-01

End position

2016-01-11

Dataset reference date

date type

creation

effective date

2007-01-01

date type

revision

effective date

2016-01-11

Frequency of update

biannually

Quality and validity

Lineage

Data was created by extracting DNA from leaves or buds of sample trees and following PCR protocls to generate DNA fingerprints for each samples on a Licor 4200 sequencer. When the samples differ in their fingerprint they are considered different clones. For QA purposes, the data were scored in-house. The fingerprints are specific to clones, not locations i.e. the same clone can be present in Edinburgh and Dorset.

Conformity

Data format

name of format

Open format | MS Excel (XLSX)

version of format

MS Excel 2010

Constraints related to access and use

Constraint set

Use constraints

Contains Forestry Commission information licensed under the Open Government Licence v3.0.

Constraint set

Limitations on public access

There are no public access constraints to this data. Use of this data is subject to the licence identified.

Responsible organisations

Responsible party

organisation name

Forestry Commission

email address

mapping.geodata@forestry.gov.uk

web address

http://www.forestry.gov.uk/

description: Forestry Commission Website

responsible party role

pointOfContact

Metadata on metadata

Metadata point of contact

organisation name

Forestry Commission

email address

mapping.geodata@forestry.gov.uk

responsible party role

pointOfContact

Metadata date

2020-03-19

Metadata language