Identification

Title

Distribution maps of Arctostaphylos uva-ursi, Vaccinium myrtillus and Vaccinium vitis-idaea across Scotland as hosts for Phytophthora

Abstract

These spatial layers contain the predicted occurrence and abundance of three heathland shrubs, Arctostaphylos uva-ursi, Vaccinium myrtillus and Vaccinium vitis-idaea identified as susceptible host species for Phytophthora ramorum and Phytophthora kernoviae in Scotland. The distribution models were developed from quadrat vegetation data kindly provided by Scottish Natural Heritage combined with data on climate and soil conditions as well as deer abundance and were fitted using a Bayesian Generalised Mixed Modelling approach adapted for input data on the DOMIN scale. This research was funded by the Scottish Government under research contract CR/2008/55, 'Study of the epidemiology of Phytophthora ramorum and Phytophthora kernoviae in managed gardens and heathlands in Scotland' and involved collaborators from St Andrews University, Science and Advice for Scottish Agriculture (SASA), Scottish Natural Heritage (SNH), Forestry Commission, the Food and Environment Research Agency (FERA) and the Centre for Ecology & Hydrology (CEH). Full details about this dataset can be found at https://doi.org/10.5285/5749df3d-000c-445e-a37f-dc0763b4d5ec

Resource type

dataset

Resource locator

https://data-package.ceh.ac.uk/data/5749df3d-000c-445e-a37f-dc0763b4d5ec

name: Download the data

description: Download a copy of this data

function: download

https://data-package.ceh.ac.uk/sd/5749df3d-000c-445e-a37f-dc0763b4d5ec.zip

name: Supporting information

description: Supporting information available to assist in re-use of this dataset

function: information

Unique resource identifier

code

https://catalogue.ceh.ac.uk/id/5749df3d-000c-445e-a37f-dc0763b4d5ec

codeSpace

doi:

Dataset language

eng

Spatial reference system

code identifying the spatial reference system

Classification of spatial data and services

Topic category

environment

Keywords

Keyword set

keyword value

Habitats and Biotopes

originating controlled vocabulary

title

GEMET - INSPIRE themes, version 1.0

reference date

date type

publication

effective date

2008-06-01

Keyword set

keyword value

originating controlled vocabulary

title

Wikidata

reference date

date type

creation

effective date

2012-10-29

Keyword set

keyword value

common bilberry

blue whortleberry

winberry

lingonberry

bearberry

Geographic location

West bounding longitude

-8.648

East bounding longitude

-0.728

North bounding latitude

60.861

South bounding latitude

54.634

Temporal reference

Temporal extent

Begin position

2012-01-01

End position

2012-12-31

Dataset reference date

date type

publication

effective date

2016-07-07

date type

creation

effective date

2013-12-12

Frequency of update

notPlanned

Quality and validity

Lineage

A logit-normal model was developed, structured as a generalized linear mixed model (GLMM) for logit-transformed proportions. An approach was adopted that would deal with overdispersion (the large number of absence records for the species), the unequal numbers of quadrats taken per NVC survey site, and the uncertainty around the true percent cover arising from the unequal size of the DOMIN class intervals - such that the true percent cover is an unobserved latent variable. The supporting documentation contains full details of the GLMM used. Adam Butler from Biomathematics and Statistics Scotland (BioSS) provided statistical advice for habitat suitability modelling.

Conformity

Conformity report

specification

title

Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services

reference date

date type

publication

effective date

2010-12-08

degree

explanation

Data format

name of format

Shapefile

version of format

Constraints related to access and use

Constraint set

Limitations on public access

Constraint set

Limitations on public access

Constraint set

Limitations on public access

Constraint set

Limitations on public access

The following statement is also required when reusing the data: 'Contains, or is based on, information supplied by the Forestry Commission. © Crown copyright and database right [2014] Ordnance Survey [100021242]'

Constraint set

Limitations on public access

If you reuse this data, you should cite: Searle, K., Butler, A., Harris, C., Purse, B.V. (2016). Distribution maps of Arctostaphylos uva-ursi, Vaccinium myrtillus and Vaccinium vitis-idaea across Scotland as hosts for Phytophthora . NERC Environmental Information Data Centre https://doi.org/10.5285/5749df3d-000c-445e-a37f-dc0763b4d5ec

author

Metadata on metadata

Metadata point of contact

organisation name

Environmental Information Data Centre

full postal address

Lancaster Environment Centre, Library Avenue, Bailrigg

Lancaster

LA1 4AP

email address

info@eidc.ac.uk

responsible party role

pointOfContact

Metadata date

2021-06-25T18:33:24

Metadata language

eng